SCI Publications

Zengin, T.; Masud, B.A.; Önal-Süzek, T. TCGAnalyzeR: An Online Pan-Cancer Tool for Integrative Visualization of Molecular and Clinical Data of Cancer Patients for Cohort and Associated Gene Discovery. Cancers 2024, 16, 345. https://doi.org/10.3390/cancers16020345

Sali̇hoğlu, Rana; Saraçoğlu, Fati̇h; Si̇bai̇, Mustafa; Zengi̇n, Tali̇p; Abak Masud, Başak; Karasoy, Onur; and Önal Süzek, Tuğba (2023) “CompCorona: A web application for comparative transcriptome analyses of coronaviruses reveals SARS-CoV-2-specific host response,” Turkish Journal of Biology: Vol. 47: No. 6, Article 5. https://doi.org/10.55730/1300-0152.2673 (2023) “CompCorona: A web application for comparative transcriptome analyses of coronaviruses reveals SARS-CoV-2-specific host response,” Turkish Journal of Biology: Vol. 47: No. 6, Article 5. https://doi.org/10.55730/1300-0152.2673

Kılıç Banu, İbrahim Ahmed Hassan, Aksoy Selahattin, Sakman Mehmet Cihan, Demircan Gül Sude, Süzek Tuğba, 2023. A family-centered orthodontic screening approach using a machine learning-based mobile application. Journal of Dental Sciences: Vol.19 (2024),186-195, https://doi.org/10.1016/j.jds.2023.05.001

Hatipoğlu T, Esmeray Sönmez E, Hu X, Yuan H, Danyeli AE, Şeyhanlı A, Önal-Süzek T, Zhang W, Akman B, Olgun A, Özkal S, Alacacıoğlu İ, Özcan MA, You H and Küçük C (2022) Plasma Concentrations and Cancer-Associated Mutations in Cell-Free Circulating DNA of Treatment-Naive Follicular Lymphoma for Improved Non-Invasive Diagnosis and Prognosis. Front. Oncol. 12:870487.  https://10.3389/fonc.2022.870487

Karabulut OC, Karpuzcu BA, Türk E, Ibrahim AH, Süzek BE. ML-AdVInfect: A Machine-Learning Based Adenoviral Infection Predictor. Front Mol Biosci. 2021 May 7;8:647424. doi: 10.3389/fmolb.2021.647424. PMID: 34026828; PMCID: PMC8139618.

Zengin, T.; Önal-Süzek, T. Comprehensive Profiling of Genomic and Transcriptomic Differences between Risk Groups of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma. J. Pers. Med. 2021, 11, 154. https://doi.org/10.3390/jpm11020154

Salihoğlu, R ; Önal-Süzek, T.  Tissue Microbiome Associated With Human Diseases by Whole Transcriptome Sequencing and 16S Metagenomics. Front. Genet. 2021, 12:585556. doi:  10.3389/fgene.2021.585556

Hatipoğlu Tevfik,Esmeray Esra,Hu Xiaozhou, Yuan Hongling, Danyeli Ayça Erşen, Şeyhanlı Ahmet, Önal-Süzek Tuğba, Zhang Weiwei, Olgun Aybüke,Akman Burcu, Özkal Şermin, You Hua, Alacacıoğlu İnci, Özcan Mehmet Ali,Kucuk Can, Ultra-Deep Targeted Sequencing Reveals Cancer-Associated, Prognostically Significant Mutations in Circulating Cell-Free DNA in Treatment-Naive Patients with Follicular Lymphoma, 2020, Blood , 136 (Supplement 1): 20–21.

Demircan Turan, Hacıbektaşoğlu Harbiye, Sibai Mustafa, Fesçioğlu Ece Cana, Altuntaş Ebru, Öztürk Gürkan, Süzek Barış Ethem, 2020. Preclinical Molecular Signatures of Spinal Cord Functional Restoration: Optimizing the Metamorphic Axolotl (Ambystoma mexicanum) Model in Regenerative Medicine. OMICS: A Journal of Integrative Biology

Samy Asmaa, Süzek Barış Ethem, Özdemir Mehmet Kemal, Şensoy Özge, 2020. In Silico Analysis of a Highly Mutated Gene in Breast Cancer ProvidesInsight Into Abnormal mRNA Splicing: Splicing Factor 3B Subunit 1-K700E Mutant. Biomolecules

Zengin Talip, Önal-Süzek Tuğba, 2020,Analysis of Genomic and Transcriptomic Variations as Prognostic Signature for Lung Adenocarcinoma,  BMC Bioinformatics,10.1186/s12859-020-03691-3 ,2020

Sibai Mustafa, Altuntaş Ebru, Süzek Barış Ethem, Şahin Betül, Parlayan Cüneyd, Öztürk Gürkan, Baykal Ahmet Tarık, Demircan Turan, 2019. Comparison of protein expression profile of limb regeneration between neotenic and metamorphic axolotl. Biochemical and Biophysical Research Communications

Bakar Dertlioğlu Selma, Edgünlü Tuba, Şen Deniz, Süzek Tuğba, 2019. Extracellular Matrix Protein 1 Gene Mutations In Turkish Patients With Lipoid Proteinosis. Indian Journal of Dermatology,